PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_04013.1_g00003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 179aa    MW: 20468.7 Da    PI: 6.5689
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_04013.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.6e-182271255
                      AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                              ykG+r +k +g+WvAeIr+p   +kr r +lg++ t+e Aa+a++ a  +l+g
  Rsa1.0_04013.1_g00003.1 22 PYKGIRMRK-WGKWVAEIREP---NKRSRLWLGSYSTPEAAARAYDTAVFYLRG 71
                             59*****99.**********9...336*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.4E-382285IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-302280IPR001471AP2/ERF domain
PROSITE profilePS5103222.7872279IPR001471AP2/ERF domain
PfamPF008475.9E-122371IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-212380IPR016177DNA-binding domain
CDDcd000186.03E-272381No hitNo description
PRINTSPR003678.1E-92334IPR001471AP2/ERF domain
PRINTSPR003678.1E-94561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MDGVANVAVS GTTTTTRKRE RPYKGIRMRK WGKWVAEIRE PNKRSRLWLG SYSTPEAAAR  60
AYDTAVFYLR GPTARLNFPE LLTGEKFTEE DMSAATIRKK ATEVGAQVDA LGSAVLDNLH  120
RVFGRDRESS DDDNKNFHRN YQNEDEDEKR LKSGGWLLER VDLNKLPDPE SSDEDWETK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-152379663ATERF1
3gcc_A4e-152379663ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00595DAPTransfer from AT5G67190Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2498145e-93DQ249814.1 Brassica rapa subsp. pekinensis cDREB mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013595304.11e-113PREDICTED: ethylene-responsive transcription factor ERF010
SwissprotQ9FH941e-100ERF10_ARATH; Ethylene-responsive transcription factor ERF010
TrEMBLA0A0D3D8811e-113A0A0D3D881_BRAOL; Uncharacterized protein
STRINGBra012140.1-P1e-108(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67190.11e-102DREB and EAR motif protein 2